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1.9 and Skip to main content Skip to main navigation Skip to user menu Skip to search Accessibility -- Neuroimaging Resources Registry -- -- Neuroimaging Data Repository -- Cloud Computing Environment Member login | Register | Help Toggle navigation Tools & Resources Browse By Attribute Browse By Top Downloads Compare Tools/Resources Download Code Snippets Image Repository Register New Tool or Resource Suggest a Tool or Resource Suggest a Data Set Community Home Community Forums Recently Active Forums Events News Funding Career Opportunities Documents Wiki Support Contact Us Feedback User Guide Technical Information View Bug/Feature/Support Requests Submit NITRC Bug Submit NITRC Feature Request Submit NITRC Support Request About NITRC About Us NITRC TEAM Our Partners Our Sponsors Our Web Trends Our Testimonials Cite NITRC Member login | Register | Help search Related Web Pages Related Web Pages Matrix View Tools/Resources People NIF for Advanced Search Support NITRC. Donate Today! New to NITRC? Learn more here. -- Featured tool/resource Sinoplan Sinoplan is a powerful software designed for planning of stereotactic implantation surgery, such as depth electrodes(SEEG) or DBS, It is also an useful neuroimaging tool. Main functions: Multi-model image fusion. Automatic image registration; 3D reconstruction and visualization of Vessel, skin, cranial and bone; Easily trajectory planning and viewing, 8-16pins electrode avaliable. Calibration of the parameter of stereotactics frame, support both crw and leksell. Working environment: System: Windows 10 (64bits) CPU: Intel Core i7 Memory: 8G Graphic: Nvidia GeForce GTX1050M or higher is recommended Network connection required. Attention: For intellectual property protection reason, this software must be worked in network environment and online verification may be required during operation. Users can use most of the software's features and register via email to access all functions. If have any questions or want to report bugs, feel free to leave us messages through forum or contact lz@sinovationmed.com. -- -- Featured tool/resource NeuroStars A question and answer site for neuroinformatics. -- -- Featured tool/resource SIGMA Rat Brain Templates and Atlases The SIGMA resources offer to the preclinical neuroimaging community a complete set of in vivo and ex vivo templates, tissues priors as well as functional and anatomical atlases of the rat brain. This new set of resources allows both linear and non-linear coregistration of multimodal acquisitions performed on the same animal (functional, anatomical and diffusion), leading to an accurate identification of the brain territories involved in a physiological or pathophysiological process. The SIGMA resources pave the way for standardization in preclinical research, but also for multicentric preclinical studies needed to increase their significance. -- -- Featured tool/resource OpenNeuro OpenNeuro (https://openneuro.org/) is a data sharing repository for both researchers to seamlessly upload their datasets onto and download off of. We currently have over 250 publicly available datasets that contain many different psychological tasks and modalities, while following the BIDS (Brain Imaging Data Structure) standard. The repository is currently mostly MRI, but we accept EEG, iEEG, and MEG data. The repository is able to expand to accept and store other modalities as they are specified in the BIDS standard. -- Previous Next Browse Home Page Links Browse By -- Domain CT (76) Clinical Neuroinformatics (104) Computational Neuroscience (198) Domain Independent (127) EEG/MEG/ECoG (146) Imaging Genomics (80) MR (806) Optical Imaging (51) PET/SPECT (87) Software Atlas Application (45) Connectivity Analysis (36) Database Application (23) Experimental Control (7) Format Conversion (19) Genomic Analysis (20) Next Generation Sequencing (2) Other Omics (1) Pathways & Networks (1) SNP's & Genes (15) Image Reconstruction (15) Tomography (1) Information Theory (4) Modeling (83) Finite Element Analysis (2) Forward - Inverse (20) EEG Modeling (14) MEG Modeling (12) Mesh Generation (10) Model Generation (2) Monte Carlo (5) Random Walk (1) Simulation (10) Super Tensor (7) Diffusion Spectrum (4) Q-Ball (5) Tensor Metric (16) Direction (1) Neuronal Characterization (1) Quantification (59) Morphology (10) Overlap Metrics (4) DICE Coefficient (1) Tanomoto Coefficient (1) Position (4) Quantitative Shape Analysis (6) Stereology (1) Volumetric Analysis (25) Center of Mass (2) Volume Measurement (8) Segmentation (75) Active Contour (4) Expectation Minimization (3) Intensity Contour (2) KMeans (1) Manual (6) Neural Network (3) Quality Metrics (4) Region Growing (5) Constrained Region Growing (2) Region of Interest (18) Labeling (10) Volumetric Analysis (14) Shape Analysis (22) Medial Axis (2) Shape Decomposition (4) Spherical Harmonics (4) Spatial Transformation (71) Artifact Removal (15) Colocalization (1) Frequency Domain (7) Filtering (4) Fourier Transform (2) Intensity Operations (5) Intensity Non-uniformity Correction (3) Quality Metrics (8) Registration (41) Fiducial (1) Image-to-Image (22) Image-to-Template (8) Resampling (20) Sinc Function Interpolation (1) Spline Interpolation (3) Tri-linear (1) Spatial Convolution - Deconvolution (3) Warping (17) Affine Warp (5) Linear Warp (1) Nonlinear Warp (7) Wavelet Transformation (4) Statistical Operation (82) Discriminant Analysis (4) Independent Component Analysis (20) Multivariate Analysis (17) Principal Component Analysis (14) Regression (24) Linear (15) Nonlinear (3) Surface Analysis (26) Curvature (4) Gaussian Curvature (3) Mean Curvature (4) Thickness (8) Temporal Transformation (33) Fourier Time-domain Analysis (8) Motion Analysis (5) Spectral Analysis (14) Temporal Convolution - Deconvolution (2) Temporal Curve Fitting (3) Haemodynamic Response (3) Temporal Integration (1) Temporal Wavelet Analysis (3) Time Domain Analysis (37) ANOVA (2) Correlation (6) Autocorrelation (1) Cross-correlation (3) Tractography (51) Fiber Tracking (30) Diffusion MR Fiber Tracking (24) Visualization (123) Animation (12) Image Display (57) Clipping (5) Three Dimensional Display (30) Two Dimensional Display (24) Rendering (42) Surface Rendering (31) Volume Rendering (16) Workflow (48) Data Atlas Data (33) Data (64) Database (40) Test Data (8) Diagnosis Agnosia (34) Amyotrophic Lateral Sclerosis (94) Anorexia Nervosa (42) Aphasia (70) Apraxias (23) Asperger Syndrome (28) Ataxia (64) Attention Deficit Disorder with Hyperactivity (155) Autistic Disorder (138) Bell Palsy (7) Bipolar Disorder (147) Brain Concussion (48) Brain Injuries (167) Bulimia (20) Child Development Disorders, Pervasive (124) Crohn Disease (35) Dementia (272) AIDS Dementia Complex (23) Alzheimer Disease (263) Creutzfeldt-Jakob Syndrome (26) Dementia, Multi-Infarct (1) Depression (197) Diabetes Mellitus (168) Dyslexia (81) Epilepsy (200) Headache Disorders, Primary (61) Migraine Disorders (60) Holoprosencephaly (3) Huntington Disease (76) Hydrocephalus (48) Hypertension (137) Landau-Kleffner Syndrome (4) Lymphoma, Non-Hodgkin (32) Multiple Sclerosis (159) Muscular Dystrophies (21) Neurofibromatosis 1 (22) Obsessive-Compulsive Disorder (74) Parkinson Disease (185) Rett Syndrome (16) Schizophrenia (236) Stroke (211) Substance-Related Disorders (142) Alcohol-Related Disorders (27) Cocaine-Related Disorders (70) Tobacco Use Disorder (54) Tourette Syndrome (36) Latest News -- -- Feb 5 February Webinar ReproNim: A Center for Reproducible Neuroimaging Computation no comments Feb 4 SIGMA_Wistar_Rat_Brain_TemplatesAndAtlases_Version1.1 SIGMA Rat Brain Templates and Atlases no comments Jan 28 ReproNim's 2nd newsletter has been published ReproNim: A Center for Reproducible Neuroimaging Computation no comments Jan 23 Brain network organization in the mouse lemur primate Functional organization of the mouse lemur Primate Microcebus murinus : from multilevel validation to comparison with humans no ...