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GForge - Comprehensive, Elegant, Scalable Teamwork
https://www.nitrc.org/pro/
NITRC: Welcome
https://www.nitrc.org/
INIA19 Primate Brain Atlas: Tool/Resource Info
https://nitrc.org/projects/inia19/
The Federated Tumor Segmentation (FeTS) initiative | CBICA
https://fets.projects.nitrc.org/
Cancer Imaging Phenomics Toolkit (CaPTk): Overview
https://captk.projects.nitrc.org/
NITRC: Snippet Library
https://www.nitrc.org/snippet/
International Neuroimaging Data-sharing Initiative
http://fcon_1000.projects.nitrc.org/
XNAT Documentation Home
https://www.nitrc.org/frs/downloadlink.php/4056
Download 3D Slicer | 3D Slicer
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NiiStat is a set of Matlab scripts for analyzing neuroimaging ...
https://www.nitrc.org/frs/downloadlink.php/10834

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1.9 and www/themes/nitrc3.0/scripts/ugly.jsTools & Resources Browse By Attribute Browse By Top Downloads Compare Tools/Resources Download Code Snippets Image Repository Register New Tool or Resource Suggest a Tool or Resource Suggest a Data Set Community Home Community Forums Recently Active Forums Events News Funding Career Opportunities Documents Wiki Support Contact Us Feedback User Guide Technical Information View Bug/Feature/Support Requests Submit NITRC Bug Submit NITRC Feature Request Submit NITRC Support Request About NITRCNITRC TEAM Our Partners Our Web Trends Our Testimonials Cite NITRC Member login | Register | Help search Related Web Pages Related Web Pages Matrix View Tools/Resources People NIF for Advanced Search Support NITRC. Donate Today! New to NITRC? Learn more here. Featured tool/resource CONN : functional connectivity toolbox CONN is a Matlab-based cross-platform software for the computation, display, and analysis of functional connectivity in fMRI (fcMRI). CONN includes a rich set of connectivity analyses (seed-based correlations, ROI-to-ROI graph analyses, ICA, masked ICA, fc-MVPA, generalized PPI, ALFF, ICC, GCOR, LCOR, etc.) in a simple-to-use and powerful software package CONN is available for resting state data (rsfMRI) as well as task-related designs. It covers the entire pipeline from raw fMRI data to hypothesis testing. Highlights: Comprehensive quality assurance methods/measures/displays (scrubbing/ART, CompCor/ICA/GSR denoising, GCOR/FD QC covariates) Connectome-wide analyses (ICA, fc-MVPA) Dynamic connectivity analyses (dyn-ICA) FWE-control of connectivity matrices (NBS) Non-parametric cluster-level statistics (permutation tests) ANOVA, regression, longitudinal, and mixed designs Parallelization options (SGE/Grid Engine, PBS/Torque, LSF, Slurm) Mac/Windows/Linux/HPC SPM8/SPM12 https://www.conn-toolbox.org Featured tool/resource eeg_pipelines This repository contains 4 stand-alone pipelines (along with one test dataset), in EEGLAB, Fieldtrip, Brainstorm, and MNE. There is also a link to the HAPPE EEGLAB-based pipeline. The pipelines have been optimized to process event-related potential and are described in the associated manuscript. All pipelines run on the sample data provided although they do require a separate installation of the corresponding software packages. Based on our scanning of the hyperparameter space for artifact rejection and preprocessing, these are the best automated EEG pipelines for EEGLAB, Fieldtrip, Brainstorm, and MNE to process ERP. Test them yourself by plugging in your data. Featured tool/resource OASIS-4: Clinical Cohort OASIS-3 and OASIS-4 are the latest releases in the Open Access Series of Imaging Studies (OASIS) that is aimed at making neuroimaging datasets freely available to the scientific community. By compiling and freely distributing this multimodal dataset generated by the Knight ADRC and its affiliated studies, we hope to facilitate future discoveries in basic and clinical neuroscience. OASIS-4 contains MR, clinical, cognitive, and biomarker data for 663 individuals aged 21 to 94 that presented with memory complaints. This is a unique dataset and not an update to the OASIS-3 Longitudinal Multimodal Neuroimaging dataset. https://sites.wustl.edu/oasisbrains/home... Previous Next Browse Home Page Links Browse ByDomain CT (89) Clinical Neuroinformatics (111) Computational Neuroscience (234) Domain Independent (149) ECOG (14) EEG/MEG (175) Imaging Genomics (89) MR (907) Optical Imaging (66) PET/SPECT (102) Software Atlas Application (48) Connectivity Analysis (32) Database Application (25) Experimental Control (8) Format Conversion (19) Genomic Analysis (4) Next Generation Sequencing (2) Other Omics (1) Pathways & Networks (1) SNP’s & Genes (6) Image Reconstruction (13) Tomography (1) Information Theory (4) Longitudinal Analysis (1) Modeling (24) Finite Element Analysis (2) Forward - Inverse (5) EEG Modeling (15) MEG Modeling (12) Mesh Generation (10) Model Generation (2) Monte Carlo (5) Random Walk (1) Simulation (10) Super Tensor (1) Diffusion Spectrum (3) Q-Ball (4) Tensor Metric (14) Direction (1) Neuronal Characterization (1) Quantification (16) Morphology (11) Overlap Metrics (3) DICE Coefficient (1) Intersection (1) Tanomoto Coefficient (1) Position (5) Quantitative Shape Analysis (7) Stereology (1) Volumetric Analysis (15) Center of Mass (2) Volume Measurement (9) Segmentation (42) Active Contour (4) Expectation Minimization (3) Intensity Contour (2) KMeans (1) Manual (6) Neural Network (5) Quality Metrics (4) Region Growing (3) Constrained Region Growing (2) Region of Interest (8) Labeling (3) Volumetric Analysis (15) Shape Analysis (17) Medial Axis (2) Spatial Transformation (11) Artifact Removal (15) Colocalization (1) Frequency Domain (2) Filtering (3) Fourier Transform (2) Intensity Operations (2) Intensity Non-uniformity Correction (3) Quality Metrics (8) Registration (18) Fiducial (1) Image-to-Image (7) Image-to-Template (8) Resampling (16) Sinc Function Interpolation (1) Spline Interpolation (3) Tri-linear (1) Spatial Convolution - Deconvolution (3) Warping (7) Affine Warp (5) Linear Warp (1) Nonlinear Warp (7) Wavelet Transformation (4) Statistical Operation (31) Discriminant Analysis (4) Independent Component Analysis (21) Multivariate Analysis (18) Principal Component Analysis (15) Regression (9) Linear (15) Nonlinear (3) Surface Analysis (18) Thickness (8) Temporal Transformation (7) Fourier Time-domain Analysis (9) Motion Analysis (5) Spectral Analysis (15) Temporal Convolution - Deconvolution (2) Temporal Integration (1) Temporal Wavelet Analysis (3) Time Domain Analysis (15) ANOVA (2) Correlation (3) Autocorrelation (1) Cross-correlation (3) Tractography (21) Fiber Tracking (6) Diffusion MR Fiber Tracking (23) Visualization (51) Animation (14) Image Display (20) Clipping (5) Three Dimensional Display (31) Two Dimensional Display (24) Rendering (7) Surface Rendering (32) Volume Rendering (16) Workflow (54) Data Atlas Data (40) Data (67) Database (45) Test Data (8) Diagnosis Agnosia (38) Amyotrophic Lateral Sclerosis (100) Anorexia Nervosa (49) Aphasia (81) Apraxias (26) Asperger Syndrome (26) Ataxia (72) Attention Deficit Disorder with Hyperactivity (169) Autistic Disorder (162) Bell Palsy (6) Bipolar Disorder (164) Brain Concussion (62) Brain Injuries (182) Bulimia (28) Child Development Disorders, Pervasive (121) Crohn Disease (41) Dementia (11) AIDS Dementia Complex (23) Alzheimer Disease (287) Creutzfeldt-Jakob Syndrome (26) Dementia, Multi-Infarct (1) Depression (216) Diabetes Mellitus (174) Dyslexia (91) Epilepsy (217) Headache Disorders, Primary (1) Migraine Disorders (69) Holoprosencephaly (3) Huntington Disease (82) Hydrocephalus (55) Hypertension (142) Landau-Kleffner Syndrome (3) Lymphoma, Non-Hodgkin (31) Multiple Sclerosis (173) Muscular Dystrophies (22) Neurofibromatosis 1 (24) Obsessive-Compulsive Disorder (86) Parkinson Disease (208) Rett Syndrome (16) Schizophrenia (252) Stroke (230) Substance-Related Disorders (47) Alcohol-Related Disorders (25) Cocaine-Related Disorders (78) Tobacco Use Disorder (58) Tourette Syndrome (46) Typically Developing (2) Education Course (3) Multi-Media (2) Tutorial (5) Workshop (2) Latest News May 7 NITRC-CE v0.57-14 released NITRC Community no comments Apr 4 NBS-Predict v1.0.0-beta.12 released NBS-Predict: A Prediction-based Extension of the Network-based Statistic no comments Mar 26 SOBP BrainHack, May 7-8, 2024, Austin TX ReproNim: A Center for Reproducible Neuroimaging Computation no comments Mar 21 NITRC 2.1.68 released NITRC Community no comments Mar 12 NeuroDOT Request for Feedback NeuroDOT no comments Mar 8 March Data Sharing and Reuse Seminar NITRC Community no comments Mar 6 New GitHub Release: NeuroDOT v1.3 NeuroDOT no comments more Calendar May 15 XIII Biennial Conference - BcnPit May 16 Thalamocortical networks (ThalNet): Bringing together cellular and cognitive neuroscience May 16 19th World Congress...

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